This pack bundles a settings.dat file, which has the side effect of making uTorrent read and store its settings from/in the local directory and not your profile folder. Previous releases of the mod did not do this because it wasn't necessary to remove the advertisements. In any case, delete all .dat, .old and .lng files from the directory where the executable is and you should revert to the old behavior.
Not sure what "it doesn't want to cheat anymore" is supposed to mean, as cheating capabilities are built-in to the mod you use and not affected by settings, but chances are it'll be fixed by doing the above too.